PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10003008

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

SRS

Protein Properties

Length: 80aa MW: 8342.6 Da PI: 9.0191

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10003008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	23.1	2.1e-07	36	70	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C +CGn a+ C ++ C+ CC C+ hv Lus10003008 36 RPKCMQCGNLARSRCPYQSCKSCCSKAQNPCHIHV 70 679*******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MVASSPAPII NTSDSSLTPT AAASGSQPKT VRHVNRPKCM QCGNLARSRC PYQSCKSCCS 60 KAQNPCHIHV IRCELGQAG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10003008

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440124.1	9e-25	uncharacterized protein LOC18046085 isoform X2
Refseq	XP_006477042.1	8e-25	uncharacterized protein LOC102615497 isoform X1
Refseq	XP_006477043.1	8e-25	uncharacterized protein LOC102615497 isoform X2
Refseq	XP_011032005.1	8e-25	PREDICTED: uncharacterized protein LOC105130965
TrEMBL	A0A067EP79	2e-23	A0A067EP79_CITSI; Uncharacterized protein
TrEMBL	A0A3N7EVY5	4e-24	A0A3N7EVY5_POPTR; Uncharacterized protein
TrEMBL	V4VKV2	2e-23	V4VKV2_9ROSI; Uncharacterized protein
STRING	Lus10003008	1e-50	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-22

Link Out ? help Back to Top
Phytozome	Lus10003008