PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003037
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 221aa    MW: 25122.8 Da    PI: 4.5139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003037genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-191969256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +grWvAeIr p+e   ++r +lg+f+taeeAa  ++ a+ k++g+
  Lus10003037 19 KYRGVRRRP-WGRWVAEIRNPVE---HRRSWLGTFDTAEEAAMVYDIAAIKFKGH 69
                 8********.**********876...5************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-311875No hitNo description
SMARTSM003804.2E-351982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-281976IPR001471AP2/ERF domain
PfamPF008472.0E-121969IPR001471AP2/ERF domain
PROSITE profilePS5103223.8021976IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-211975IPR016177DNA-binding domain
PRINTSPR003673.1E-102031IPR001471AP2/ERF domain
PRINTSPR003673.1E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKRNSKNQKS TPPSAVGQKY RGVRRRPWGR WVAEIRNPVE HRRSWLGTFD TAEEAAMVYD  60
IAAIKFKGHN ALTNFVNPPP PPAVSGYDSE KEPHSRLCSP TSVLSFRHAE EMASEPTTAE  120
IPEWGNWEGA VRKKPPPAVE ESAAEMAEAY FKENVESFRV EELVDFEENP APNFVEDYYY  180
HMPDSFLVQE GGDSDNFWVG MEKEEDLEAC NWDVDNYFAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171575162ATERF1
3gcc_A1e-171575162ATERF1
5wx9_A2e-1719751471Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003037
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100030371e-162(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.19e-26cytokinin response factor 5