PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003119
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CAMTA
Protein Properties Length: 901aa    MW: 100936 Da    PI: 6.4522
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003119genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11666.4e-52161312116
         CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                  l+e ++rwlk+ e+  iL+n++k+++t++++ rp+ gsl+Lyn++++r+frkD ++w+kkkdg+tv E+hekLKvg+ve l+cyYah+ee p+fqrr+
  Lus10003119  16 LQEaQHRWLKPVEVFFILQNHDKYKFTEKTPIRPSAGSLFLYNKRVTRFFRKDDHNWRKKKDGRTVAEAHEKLKVGNVERLNCYYAHGEEIPHFQRRS 113
                  56669********************************************************************************************* PP

         CG-1  99 ywlLeeelekivlvhyle 116
                  yw+Le  ++++vlvhy++
  Lus10003119 114 YWMLEPPYDHVVLVHYRD 131
                  ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.43712138IPR005559CG-1 DNA-binding domain
SMARTSM010768.5E-6715133IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-4418131IPR005559CG-1 DNA-binding domain
CDDcd001020.00401330415No hitNo description
SuperFamilySSF812964.2E-15330414IPR014756Immunoglobulin E-set
PfamPF018331.8E-6330414IPR002909IPT domain
Gene3DG3DSA:2.60.40.108.7E-6330416IPR013783Immunoglobulin-like fold
SuperFamilySSF484033.73E-16525621IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-15526619IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.379527619IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-7547621IPR020683Ankyrin repeat-containing domain
CDDcd002042.14E-14547619No hitNo description
SMARTSM002483.3E-4560589IPR002110Ankyrin repeat
PROSITE profilePS5008810.686560592IPR002110Ankyrin repeat
SMARTSM00248780599628IPR002110Ankyrin repeat
SuperFamilySSF525401.15E-7676786IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001528679701IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187680709IPR000048IQ motif, EF-hand binding site
SMARTSM0001522733755IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529734763IPR000048IQ motif, EF-hand binding site
PfamPF006120.093737754IPR000048IQ motif, EF-hand binding site
SMARTSM000153.2E-5756778IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.993757781IPR000048IQ motif, EF-hand binding site
PfamPF006121.8E-5759778IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MLQPDPGQGY DINRLLQEAQ HRWLKPVEVF FILQNHDKYK FTEKTPIRPS AGSLFLYNKR  60
VTRFFRKDDH NWRKKKDGRT VAEAHEKLKV GNVERLNCYY AHGEEIPHFQ RRSYWMLEPP  120
YDHVVLVHYR DINEGITPSG SLVQSTPGAS SHIGPSPSYN TTHNQGSTPP ISNSYEPYTN  180
SSSPGSTEVT SEILIKGNEG FSATKFAAEK NDVNQYLRSL KKNLSLDDDM VTGLDLFDEG  240
PLNQPGFLGY DDAFEQEKMT SALKSEPVEE FQNSQWLNFG QVNYGAAAAV SGSGVGKSEV  300
RDVNPDSYGM PFSHGQADSR LAIAQHNKFT IRKISPEWGY CNEVTKVLIV GFFLCDPSGS  360
AWTCMFGDKE VPLEIIQEGV LQCATPLEMP PGKVSICITS GNRQPCSEIG QFEFRNKSSG  420
DIVHQLLERS AEEMLSLVRL VEMLLSGSSL PKLNDEESGL DQPEILKLKS DEDSWVQVIE  480
ALLVGNGTSS DTVYWLLEQL LKDKLHRWLS SKYNRFDYQD GCLLSKKEQG IIHMVAGLGF  540
EWALIPILNH GVSVDFRDIN GWTALHWASR FGREKMVAAL IASGASPGAV TDPNSQDPAG  600
KTPASIAAIN GHHGLAGYLS ELALTTHLSS LTLEESELSK GSAEVEAERT VVDSISNAVF  660
PASFEDQVSI NTTLAAVRNS AQAAARIQSA FRAHSFRKRQ QREAAVRDEY GIRSREIQEL  720
SALSKMTFGN ARDYSTAALS IQKKYRGWKN RQDFLTLKKK VVKIQAHVRG YQVRKHYRVI  780
CWAVGIIDKV VLRWRRKGAG LRNFRNKAEQ PIVEDEESDE DILKVFRKQK VDGAIDEAVS  840
RVLSMVHSPD ARDQYQRMLE RYKQAKAELA TTSEAGTLDQ PDNTNNEFGM DDDDLQQYFQ  900
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003119
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229867.10.0calmodulin-binding transcription activator 4 isoform X3
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1Q3DAL60.0A0A1Q3DAL6_CEPFO; IQ domain-containing protein/TIG domain-containing protein/CG-1 domain-containing protein/Ank_2 domain-containing protein
STRINGLus100031190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]