PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003172
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 321aa    MW: 34316.4 Da    PI: 9.6299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003172genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09151198455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10003172 151 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 198
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.23E-10145202No hitNo description
SuperFamilySSF474598.9E-17145212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-17147212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MASPSGGGGG GSKLPRVSSS PSLKVLGSQK GNKGGSPSPS PLAELRNSSP SPEESSLSEH  60
RIPISAADPN PKKRKSAPKG KSVTQANAAT TKETEPQQNP NAKRSKGNGN HDGGEQSNKA  120
NSKAAAAAKA AEEAPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL QDLVPGCNKV  180
TGKALMLDEI INYVQSLQRQ VEFLSMKMAS VNTTRLDFNL DSLPAKDMFQ GGGMFQMDSA  240
VMGHRQNQQP MHETGSGSGS SATAQFDQNI LSLHSQLPSL DSFHHDQFQT FCDEDLQSIV  300
QMATNMPEAA YLGKIKISCD *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003172
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534345.12e-95transcription factor bHLH62
SwissprotQ9FJL45e-61BH078_ARATH; Transcription factor bHLH78
TrEMBLB9T7X66e-94B9T7X6_RICCO; Transcription factor, putative
STRINGLus100031720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.12e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]