PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003183
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 217aa    MW: 24783.1 Da    PI: 6.7992
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003183genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.2e-081661992154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Lus10003183 166 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 199
                  469*****************************87 PP
2ELK28.92.7e-10120141122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++L+++++E++
  Lus10003183 120 ELKHELKQGYKEKLVDIREEIL 141
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.3E-26863IPR005541KNOX2
PfamPF037916.8E-191262IPR005541KNOX2
SMARTSM011889.2E-4120141IPR005539ELK domain
PfamPF037899.4E-7120141IPR005539ELK domain
PROSITE profilePS5121310.144120140IPR005539ELK domain
PROSITE profilePS5007111.758140203IPR001356Homeobox domain
SuperFamilySSF466891.24E-16142205IPR009057Homeodomain-like
SMARTSM003894.9E-11142207IPR001356Homeobox domain
CDDcd000861.23E-11143204No hitNo description
Gene3DG3DSA:1.10.10.601.1E-25147204IPR009057Homeodomain-like
PfamPF059204.5E-18160199IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAKYSVVGNG PVVDEKELDQ FMTHYVLLLC SFKDQLQQHV RVHAMEAVMA CWELEQALQS  60
LTGVSPGEGT GATMSDDDDD QVDSDTNLYN ASMDAMDTMG FGPLVPTETE RSLMERVRLE  120
LKHELKQGYK EKLVDIREEI LRKRRAGKLP GDTTSVLKSW WQSHSKWPYP TEEDKARLVQ  180
ETGLQLKQIN NWFINQRKRN WHSNPSGSTV KSKRKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13143206871Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196215RKRNWHSNPSGSTVKSKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258684.11e-140PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-132KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A161XAU71e-139A0A161XAU7_DAUCS; Uncharacterized protein
STRINGLus100031831e-161(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-126KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]