PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003313
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 127aa    MW: 14750.8 Da    PI: 10.3013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003313genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1515103189
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  ffkv  +  +lk +  ++p++f++++g +   + + tl  ++g  W++k+  + +++r   +++++GW+ F++   L  gDf+ F+++g s+
  Lus10003313  15 FFKVI-RRESLKDKKSMIPRDFVRQCGRN--LQGKATLLAPNGLIWDMKIVKDDGDDRnakFWFKNGWQAFADNYSLSHGDFMSFQYNGGSN 103
                  67776.55666666799*********877..5559***************88555555577*************************998644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-178103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-189102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.03914121IPR003340B3 DNA binding domain
CDDcd100171.00E-1315102No hitNo description
SMARTSM010194.3E-1115120IPR003340B3 DNA binding domain
PfamPF023622.1E-1215103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEFPREEDNA QPLKFFKVIR RESLKDKKSM IPRDFVRQCG RNLQGKATLL APNGLIWDMK  60
IVKDDGDDRN AKFWFKNGWQ AFADNYSLSH GDFMSFQYNG GSNASSLESP SPYLMKRKRK  120
RETIHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100033134e-90(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-14B3 family protein