PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003334
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 159aa    MW: 18263.4 Da    PI: 6.5162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003334genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.72.4e-15151367113
          NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLp.k...........kvkaeekewyfFskrdkkyatgkrknra..tksgyWkatgkd 89 
                    P+deelvv yL +k+ + +l+ + ++ ++d+y ++ePw++  k           + +++ +++yfF++ ++ ++tg r +r+  t+ g+W++    
  Lus10003334  15 LLPSDEELVVGYLIPKLCQLPLPSSGHVIDCDLYgQFEPWEIWsKfgghdydddgeEGEETANDMYFFTPLKNMAETGMRYERSvgTNGGTWNSEDAR 112
                  56********************99999999*999467*****73378888777654333344588******************53488*******999 PP

          NAM  90 kevlskkgelvglkktLvfykgra 113
                  +   s++g  ++ kk + + + + 
  Lus10003334 113 RLGQSRDGVITWEKKRFRYLTRSC 136
                  9999999999********994322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.8459158IPR003441NAC domain
SuperFamilySSF1019412.62E-1511135IPR003441NAC domain
PfamPF023652.4E-715137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKYHHRSQQN FAFGLLPSDE ELVVGYLIPK LCQLPLPSSG HVIDCDLYGQ FEPWEIWSKF  60
GGHDYDDDGE EGEETANDMY FFTPLKNMAE TGMRYERSVG TNGGTWNSED ARRLGQSRDG  120
VITWEKKRFR YLTRSCTEKK RKRKNNGGPT MLTRQPEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125143KKRFRYLTRSCTEKKRKRK
2138143KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100033341e-117(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-07NAC domain containing protein 25