PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003386
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 435aa    MW: 48281 Da    PI: 4.4166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003386genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.7e-104686954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  Lus10003386 46 ARERRHRISDRFKILQSLVPGG-----SKMDTVSMLEQAINYVKFL 86
                 699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.5233786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1342100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-124392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-124390No hitNo description
Gene3DG3DSA:4.10.280.103.0E-114390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-74786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF537561.82E-21249420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDYFTTMAST ASSSSTKKKK NKQPNNPNPN PNRAVRLSTD PQSVAARERR HRISDRFKIL  60
QSLVPGGSKM DTVSMLEQAI NYVKFLKTQI VIHETLMNQP PPQPNNNYIE DEMTSFMFTD  120
QVAMLPDLSN YDSIPGEGSG LLYEVPGGGC SSQMMMYPPP ECFLDDGGMR LEDPSTFASR  180
IHRMLKLGLS IDEEDDGVDG GGDAEMRELE EDNEESKMEE ALFLDLLLLY LDSVSSISPE  240
VIELGFNPTV FFQIPTNQNS NLCDLLSDLV GSKRIKALVL DFFCKYAVRV AGELGIKCYL  300
YFTSSLAALA LFLYFPVIDE GSTVSIRDSD SPLPLPGLPS IPPRDMLMIM ADRCCDAYPH  360
VIETGYIMRG SAGLIVNGFN YLEANVLRAI VDWRCTPGSL PPPIYCVGPI VEERKQNTDN  420
KLGDRRRNEA AMED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vce_A2e-1625642091252HYDROQUINONE GLUCOSYLTRANSFERASE
2vch_A2e-1625642091252HYDROQUINONE GLUCOSYLTRANSFERASE
2vg8_A2e-1625642091252HYDROQUINONE GLUCOSYLTRANSFERASE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100033860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-25APRATAXIN-like