PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003458
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 215aa    MW: 24331.1 Da    PI: 5.6551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003458genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.57.7e-21321822128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............. 77 
                  p G+rF+Ptd elv++yL +k  g +     +        +++  d + + P dL + + a+++ewy F+++d+++ +g+++n               
  Lus10003458  32 PLGYRFKPTDRELVKHYLIPKSMGFEsdsafF---GcignTMNASDFFALPPYDLVSPI-AKKEEWYVFIHQDQQS-NGTQSNEDtkqgdddgdkltv 124
                  89*******************99988544442...1444368999**********7444.5679******999875.667666644678889999988 PP

          NAM  78 ....tksgyWkatgk.dkevlsk.kgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                        +g+Wk+  + d +++++ +g   g k  +++y  ++ +g+ +t+W ++eyrl
  Lus10003458 125 trtvNGEGFWKSNKSfDLTICDHsSGLPLGFKSRFTYYLSSSTRGTlETEWKLDEYRL 182
                  7765559****88775778887656667**********8877777659********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-2329190IPR003441NAC domain
PROSITE profilePS5100523.66531199IPR003441NAC domain
PfamPF023651.3E-1532182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMNSSVLSNG GEGRRRLLLV SSEETEVAKT FPLGYRFKPT DRELVKHYLI PKSMGFESDS  60
AFFGCIGNTM NASDFFALPP YDLVSPIAKK EEWYVFIHQD QQSNGTQSNE DTKQGDDDGD  120
KLTVTRTVNG EGFWKSNKSF DLTICDHSSG LPLGFKSRFT YYLSSSTRGT LETEWKLDEY  180
RLFSPPNPKG YTLLNLMPHE DQNKYTSNWQ FHGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003458
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100034581e-159(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-13NAC family protein