PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003470
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 447aa    MW: 50049.8 Da    PI: 9.6775
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003470genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07129171346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT++E ++l d+++q+  + +  Ia +++  Rt +++k+r+++
      Lus10003470 129 TWTKQETDQLFDLCEQFSLR-FVIIADRFPSSRTVEELKDRYYS 171
                      7*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162825.4E-30102176IPR032563DAMP1, SANT/Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-6124173IPR009057Homeodomain-like
SuperFamilySSF466891.3E-6125178IPR009057Homeodomain-like
SMARTSM007178.1E-9126175IPR001005SANT/Myb domain
CDDcd116582.67E-17130172No hitNo description
PfamPF054995.2E-6320380IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDAKDILGLP KTPLSVHPEK KSQPKKDSQR KPDGISREVY ALTGGLAPLM PSIDSSFLKK  60
PPPSDEKITW QWLPFTSSAR KDSLQLYHWT RVVNGVPPTG DYSFAKYNKS AEVIKYTEEE  120
YEQHLTDPTW TKQETDQLFD LCEQFSLRFV IIADRFPSSR TVEELKDRYY SVSRSILLAR  180
ATSPADVSGH PLVKETYNAS QDRDRKRALS MVLSQTRQQE RKDTEVVAEA KRITESRMAA  240
RGAEPSVMPV VDTEMAEATV NHNDGIVPPP NVRLTPVTDA PSTLVIADTS STLASLRMLP  300
VYLRTYGLEQ MVQQASSIAG LRTIKRVEQT LQDLGINLKP RVPTKAVCAE HLELRKEILT  360
FLNLQKQLQY KEAEGSSFRE GTYSEMPGTP KYAVRDHDRA FITDALAFGG ERGGRKDQKR  420
KGPGRASDTP SSPANKRPRK MKASDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A3e-20101186493DNA methyltransferase 1-associated protein 1
4iej_A3e-20101186493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016072.10.0PREDICTED: SWR1-complex protein 4-like
RefseqXP_011040863.10.0PREDICTED: SWR1-complex protein 4-like
RefseqXP_012082946.10.0SWR1-complex protein 4 isoform X3
RefseqXP_021644816.10.0SWR1-complex protein 4-like
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A2C9VUQ50.0A0A2C9VUQ5_MANES; Uncharacterized protein
STRINGLus100034700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]