PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10003492

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 24924 Da PI: 7.4068

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10003492	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.5e-18	20	73	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+++Le+ F n+++ e + eLA++lg++ rqV +W+qN+Ra++k Lus10003492 20 QKKRLTQEQVRVLERSFSFNKKLLPELKSELASQLGVPPRQVAIWYQNKRARWK 73 56789************************************************9 PP
2	HD-ZIP_I/II	99.7	2.7e-32	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqv++LE+sF+ ++kL pe K+ela++Lg+ prqva+W+qn+RAR+kt+ lE d+++L ++++ +++++rLe+ev++L++el++ Lus10003492 20 QKKRLTQEQVRVLERSFSFNKKLLPELKSELASQLGVPPRQVAIWYQNKRARWKTQTLELDHNTLELKLQNAAAHKRRLEREVARLNHELSK 111 69*************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.163	15	75	IPR001356	Homeobox domain
SMART	SM00389	4.5E-16	17	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-17	18	83	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-15	20	73	IPR001356	Homeobox domain
CDD	cd00086	1.19E-14	21	75	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-18	22	80	IPR009057	Homeodomain-like
PRINTS	PR00031	5.7E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.7E-5	55	71	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDFHSHETQQ QQQQMMKRPQ KKRLTQEQVR VLERSFSFNK KLLPELKSEL ASQLGVPPRQ 60 VAIWYQNKRA RWKTQTLELD HNTLELKLQN AAAHKRRLER EVARLNHELS KAQDTVVAFM 120 NHCRHGGCTT SSTINPNLLD HHHHLPPAPI TIPPPSDVEH YDDECPPMKM NPCGSSSDIN 180 FNNHGRGEEV NLQLEDELYA SFVMGGNSGS SGSTCSWD*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10003492

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ884713	1e-56	HQ884713.1 Linum usitatissimum clone Contig524 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9FN29	6e-30	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
STRING	Lus10003492	1e-164	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	5e-30	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Lus10003492