PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003562
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 246aa    MW: 27043.9 Da    PI: 5.3983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003562genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1898148255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+++AeIrd +    +  r++lg+f+t+eeAa a+++a+++l g
  Lus10003562  98 AYRGVRTRP-WGKYAAEIRDSTR---HgVRVWLGTFDTPEEAALAYDQAALSLQG 148
                  69****999.**********422...25***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-2297157IPR016177DNA-binding domain
CDDcd000181.66E-2997157No hitNo description
PROSITE profilePS5103222.72198156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3098157IPR001471AP2/ERF domain
SMARTSM003802.8E-3598162IPR001471AP2/ERF domain
PfamPF008474.1E-1398148IPR001471AP2/ERF domain
PRINTSPR003672.1E-1099110IPR001471AP2/ERF domain
PRINTSPR003672.1E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLDPYYNYYS SSSSPSPLDC LSSPPPQTHY WSPYGGELQQ QEEEPSNFLL CPPSNSTSSS  60
DPCSHALPPP VEEATSSSGK KKKQTKNNNS TTTVYKSAYR GVRTRPWGKY AAEIRDSTRH  120
GVRVWLGTFD TPEEAALAYD QAALSLQGSR AVLNFPAEEV SQSLEEIGCG LGKCSSPAEA  180
LKQTHYVKRK ALTRKRKGKQ SVVDQVDLEV TNSSPVITRE EVVEFEDLGS AFLEQLLFES  240
STTNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-28991581574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003562
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024189920.17e-48ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-46ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2P6R5M02e-46A0A2P6R5M0_ROSCH; Putative transcription factor AP2-EREBP family
STRINGLus100035620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-44ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]