PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003581
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 177aa    MW: 19288.3 Da    PI: 5.0582
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003581genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-193686155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr++  +g+WvAeIr+p   + r  r +lg+f t  eAa+a+++a+++l+g
  Lus10003581 36 CSYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFNTSLEAARAYDRAALSLYG 86
                 67*****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-283695No hitNo description
PfamPF008473.6E-143686IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-213795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-303795IPR001471AP2/ERF domain
SMARTSM003807.3E-3437100IPR001471AP2/ERF domain
PROSITE profilePS5103222.1153794IPR001471AP2/ERF domain
PRINTSPR003675.0E-103849IPR001471AP2/ERF domain
PRINTSPR003675.0E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEQDQQGSKR PKKALVVRSS RKGCMRGKGG PENANCSYRG VRQRTWGKWV AEIREPNRGN  60
RLWLGTFNTS LEAARAYDRA ALSLYGPSVT LNLPEENVGS SSASSSVAAV DIAVHDDSQE  120
VVVKGDDGGE GLVDWMEFAN EFVELDSEWR QHGVGMGSCL NSWDGGGFVE NCPWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18351001279Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003581
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517453.13e-42PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_021621955.11e-43dehydration-responsive element-binding protein 2G-like
SwissprotQ9LQZ21e-40DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2C9VCB83e-42A0A2C9VCB8_MANES; Uncharacterized protein
STRINGLus100035811e-127(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]