PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003668
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 451aa    MW: 49684.1 Da    PI: 7.3408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003668genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.5e-311102561128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............t 78 
                  lp+G++F Ptd elv ++L++k+   +    l ++++i++++    i++++P++Lp  ++++ + ++fF+++ ++yatg+rk+r+             
  Lus10003668 110 LPAGVKFAPTDAELV-QHLAAKCGIGNstphLFIDDFIPTLEgdtgICYSHPENLP-GARKDGTGVHFFHRTMNAYATGHRKRRKiltehstaaaatK 205
                  799************.899999877765666333344544422334**********.5567789********************8899***9999855 PP

          NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                  ++ +W++tgk+k+vl  +g ++g+kk++v+yk   +  k+ektdW+mh+++l
  Lus10003668 206 EHVRWHKTGKTKSVLL-NGVHKGCKKIMVLYKSskKGCKPEKTDWIMHQFHL 256
                  5889************.999***********6522556778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-3695275IPR003441NAC domain
PROSITE profilePS5100528.491110275IPR003441NAC domain
PfamPF023655.3E-13111256IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MTLPKLPPYH RQLSKCWQDI LRPTPVPPKS PGSVATSTVH SLKSGATFLK HLDLLSLNCR  60
AWVLDGKSIA RKLTRTCSSE SINDLGASRE CPNCHHEIDN SDVMNEWPGL PAGVKFAPTD  120
AELVQHLAAK CGIGNSTPHL FIDDFIPTLE GDTGICYSHP ENLPGARKDG TGVHFFHRTM  180
NAYATGHRKR RKILTEHSTA AAATKEHVRW HKTGKTKSVL LNGVHKGCKK IMVLYKSSKK  240
GCKPEKTDWI MHQFHLGTNE HEMAGEYVVS RIFYQLPKHS TETVVPPVMV HNAATTPMTP  300
NLNPPTRPRP EKSILYDDVA DDTVTDYSPI QEQKINALAF DDVGGYEAAW LAGESQPVEN  360
SHHFSNNIDN SLVCKQIFSS SSLFAKNSGL NLVSPYTTMN CNTSGDSGNN NPPGGVPYLE  420
NIEVDTPPDF QLSDLQFSSQ DSLLSWLDKI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003668
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915990.11e-154SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A0M4FEU21e-144A0A0M4FEU2_MANES; NAC transcription factors 58
STRINGLus100036680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.12e-87NAC domain containing protein 85