PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10003823

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 287aa MW: 31806.1 Da PI: 8.4922

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10003823	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.7	1.3e-15	74	128	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++hn+ Er+RR+++N ++ Lr+llP+ + + p kKls +++ ++v+YI +Lq Lus10003823 74 KKMNHNASERQRRKKMNALYSSLRSLLPSsD-HHPMKKLSIPTTVSRVVKYIPELQ 128 689************************65.99*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-13	73	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-15	73	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.066	73	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-13	74	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.42E-5	74	132	No hit	No description
SMART	SM00353	7.6E-11	79	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MMAMSSTSSF SSHQSNINLP LIPSSSSSSN WPLLLDDPNF ITLLPNLNLD QPPTLFPAAA 60 EQVGDGTTTT TTVKKMNHNA SERQRRKKMN ALYSSLRSLL PSSDHHPMKK LSIPTTVSRV 120 VKYIPELQQQ VETLTLRKKQ LLSTSLAHIP KPEDVQTLGQ QDKQNITNLQ TRGSSSTNFS 180 PSSSLSSSSS TVSVSWVSDD EVMVQVSIGT TNNMVHVSDL LFHLEEECGL FVMNTSSFRS 240 PQGMTFYNLH LYVEECRRGL VLLLNSEVLS ERLTSFLKQG RRLVCF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10003823

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10003823	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10003823