PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004011
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 209aa    MW: 23388.8 Da    PI: 7.6602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1969120356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ykGVr+++ +g+++AeIrdp+ n+  +r++lg++  +e+Aa a+++a+ +l+g+
  Lus10004011  69 YKGVRRRP-WGKYAAEIRDPKRNN-GARIWLGTYENPEDAALAYDRAAFRLRGA 120
                  9*******.**********87754.5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-2968128IPR001471AP2/ERF domain
SMARTSM003802.4E-3568133IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2168128IPR016177DNA-binding domain
CDDcd000181.00E-2868129No hitNo description
PROSITE profilePS5103223.24868127IPR001471AP2/ERF domain
PfamPF008478.1E-1369119IPR001471AP2/ERF domain
PRINTSPR003675.1E-136980IPR001471AP2/ERF domain
PRINTSPR003675.1E-13109129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MESLESIRQH LLDDDSLTDH SASPPFSYSQ SLSFDRVISG AANWSDILSQ VDSKPPPPPV  60
VPRKASGNYK GVRRRPWGKY AAEIRDPKRN NGARIWLGTY ENPEDAALAY DRAAFRLRGA  120
KAKLNFPHLV GSSTDDDHYE PVRVTASRKR CSRRDEESPL SWSSSPMLSF SGSENDSSAG  180
GKRRLTDLVL NVEDYWDSDQ EYIMPRGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2768133569ATERF1
3gcc_A7e-2768133569ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375127.15e-45ethylene-responsive transcription factor 13
TrEMBLU5FRU21e-43U5FRU2_POPTR; Uncharacterized protein
STRINGLus100040111e-150(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-39ethylene-responsive element binding factor 13