PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004493
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 142aa    MW: 15937.8 Da    PI: 8.0739
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004493genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB158.69.9e-50398297
        NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                 +eqdr++Pianv+rimk+vlP  akisk+ak+tvqec++efisfvtsea+dkc++e+rkt+ngdd++wal++lGf++y++++  yl+kyr +e+ek
  Lus10004493  3 EEQDRLVPIANVGRIMKQVLPPTAKISKEAKQTVQECATEFISFVTSEAADKCHKENRKTVNGDDICWALSNLGFDHYADAIVRYLHKYRMAEREK 98
                 69*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-473112IPR009072Histone-fold
SuperFamilySSF471131.96E-385124IPR009072Histone-fold
PfamPF008082.9E-26972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.0E-173654No hitNo description
PRINTSPR006154.0E-175573No hitNo description
PRINTSPR006154.0E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDEEQDRLVP IANVGRIMKQ VLPPTAKISK EAKQTVQECA TEFISFVTSE AADKCHKENR  60
KTVNGDDICW ALSNLGFDHY ADAIVRYLHK YRMAEREKAS TSQDRSSNHQ SRQPEYLRGA  120
STSFEFRVLE KGNSSSPAKP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-39492391Transcription factor HapC (Eurofung)
4g92_B4e-39492391Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023651.13e-71PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_021620249.14e-71nuclear transcription factor Y subunit B-4
SwissprotO040272e-58NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2C9VHL01e-69A0A2C9VHL0_MANES; Uncharacterized protein
STRINGLus100044931e-103(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.17e-61nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]