PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004523
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SBP
Protein Properties Length: 870aa    MW: 95818.4 Da    PI: 6.195
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004523genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.51.4e-41146223178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqve+C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Lus10004523 146 ACQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 223
                  5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33139208IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129144221IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-38146225IPR004333Transcription factor, SBP-box
PfamPF031107.1E-30147220IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.93E-7637748IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-6638752IPR020683Ankyrin repeat-containing domain
CDDcd002043.70E-7639748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MEARFGTEAA HFYGMSAMGM RTVGKRSLEW DLNDWKWDGD LFIASPLNSV PNSAGMSKQF  60
FPLATTGNSS NSSSSCSDEV NLEIEKGRRE SEKRRRVIDL EEGNSNNEQE AGTLSLKIGG  120
HGGNWEGHSG KKTKLSGGSS SSSRAACQVE DCGADLSKAK DYHRRHKVCE MHSKATKALV  180
ANVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK TNPESGTNSN NVNDDQTGGY  240
LLISLLKTLS NMHSNKSDQT TEQDLLSHLL RGLAGHTIEQ GGQNISGILQ EPQELLNNGS  300
LSGIPKQQAQ LVRANGASMQ TSSSTKSRMT NNYPACSEVR DSNPGHMKIN NFDLNDAYID  360
SDDGTEYAER SPVPTNGGTS SLGCPSWAQQ DSQQSSPPQT SGNSDSTSPQ SPASSSGDAQ  420
CRTDRIVFKL FGKEPSDFPL VVRAQILDWL SHSPTDIESY IRPGCIVLTI YLRQDEAAWD  480
ELCCDLSNSL SRLLHVSHDS FWSTGWIFVM VEHQIAFACD VAEEDVCSEI RMLEDALEFI  540
ETDDDLGEGG RIEAKNQAME FIHEMGWLLH RIQSNSRLND MAPTADVFPI TRLKWLMDFS  600
VDREWHAVVR KLLEVVLHGM VDIGAHSSLN VALVEMGILH RAVRRNSRSL VEFLLKYVPE  660
KIEPGNKAVI TWTESNDGCL FRPDMAGPGG LTPLHIAAGK DGSEDVLDAL TNDSKMMGVE  720
AWKNSRDSTG FTPEDYARLR GHYSYIHLVQ RKINSRKSSG SGHVVLEIPA VQETSSNEKQ  780
NEALSLALEI AQTMSEPAGG GSSSNCKLCS QKVAYGVSSR RSMLYRPAML SMVAVAAVCV  840
CVALLFKSCP EVVYVLSPFR WEMLEFGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31137220184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004523
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559216.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9S7P51e-162SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A498IDA80.0A0A498IDA8_MALDO; Uncharacterized protein
STRINGLus100045230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-134squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]