PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004705
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 205aa    MW: 22581.9 Da    PI: 7.1801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004705genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134769123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Lus10004705 47 YSCTFCRREFRSAQALGGHMNVH 69
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-64474No hitNo description
PROSITE profilePS5015711.1574774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEQAHQQWMW MKHGRRPAHF LATSSSSWEE RVFAEDAGGC IWPPRSYSCT FCRREFRSAQ  60
ALGGHMNVHR RDRARLKLHQ QDQLSHLDGD DVDVNPSPPP VDAAAIANCN SSPPRVSSSS  120
TTTAEGGSSE NNVKYSWPDL ALVVNIVESG SYNSSNDEKE ASGKRRKTWS SSPSVTLSLS  180
TSSSEGIVYR SGRISTDLDL ELRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-134269229superman protein
2l1o_A5e-134269229Transcriptional regulator SUPERMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100047051e-150(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10