PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10004707

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 199aa MW: 22003.8 Da PI: 6.4947

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10004707	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.9	5.2e-36	4	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++Cv+apyf +q +++f +vhk+FGasnv+kll +lp + r+da+ +++y+A ar++dP yG+v+ i++lqqq+++ ++e++ Lus10004707 4 SCGACKFLRRKCMQECVFAPYFSYHQaASHFGAVHKVFGASNVSKLLLRLPVNFRSDAAVTIAYQALARIQDPAYGCVSYIMALQQQVASIQHEIEIF 101 6********************99978*****************************************************************988 PP DUF260 98 kee 100 ++ Lus10004707 102 SHQ 104 877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.337	3	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-35	4	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGSSCGACKF LRRKCMQECV FAPYFSYHQA ASHFGAVHKV FGASNVSKLL LRLPVNFRSD 60 AAVTIAYQAL ARIQDPAYGC VSYIMALQQQ VASIQHEIEI FSHQLALNST TPLHSIHASP 120 TSNFETLCSP RPDTTGTHCY QNQQTLQLDN SELTAGSIEF DSKMTSELLP LYGWEDQNPF 180 WNSAHHNSLD ELLKGVDC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	2	99	9	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	2	99	9	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10004707

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316271.2	2e-73	LOB domain-containing protein 29
Swissprot	Q9LHS8	2e-46	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	B9HT79	2e-72	B9HT79_POPTR; Uncharacterized protein
STRING	Lus10004707	1e-148	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	8e-49	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Lus10004707

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]