PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004752
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 241aa    MW: 26613.7 Da    PI: 5.0054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004752genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18151201255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdps   k  r +lg+f+t +eAa+a+++a+ +l+g
  Lus10004752 151 RYRGVRQRP-WGKYAAEIRDPSR--KGSRLWLGTFDTSKEAARAYDRAAFQLRG 201
                  7********.**********854..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-14151201IPR001471AP2/ERF domain
PROSITE profilePS5103225.001151209IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23151210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-32151210IPR001471AP2/ERF domain
SMARTSM003802.6E-36151215IPR001471AP2/ERF domain
PRINTSPR003679.2E-11152163IPR001471AP2/ERF domain
CDDcd000186.17E-26157211No hitNo description
PRINTSPR003679.2E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAEAIEAYSA FDLIVDKYQI FLEDCLFPAG VESSSSSVSC DSAISVSDYY FFEDYPVDLE  60
TNNLPVIELS DPKPPMISEE KPGIVGLKRD SLGFSKSEQK FKAESSKMES EFELKTAVPA  120
PSRDVVYELG SEPKTDSCRE TIRSGGGDGR RYRGVRQRPW GKYAAEIRDP SRKGSRLWLG  180
TFDTSKEAAR AYDRAAFQLR GRKAILNFPA DAGEYKAVAG KDEEEADGKR KRQRGGEGGK  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27149209363ATERF1
3gcc_A4e-27149209363ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233KRKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5WCI18e-34A0A2P5WCI1_GOSBA; Uncharacterized protein
STRINGLus100047521e-173(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-24ERF family protein