PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005106
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 360aa    MW: 39305.3 Da    PI: 5.9289
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005106genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.56.5e-095698440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                 r+C+ +e  ++ l+C+ +   lC++C  ++H +       H +v
  Lus10005106 56 RICDACELAPAVLYCKADAASLCPSCDAHIH-SvnhlarrHHRV 98
                 79****************************9.446666675544 PP
2CCT63.94.8e-22266309144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++ RY+eK+ +RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Lus10005106 266 REARVVRYREKKLRRKFEKTIRYASRKAYAETRPRIKGRFAKRS 309
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-1053100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.25353100IPR000315B-box-type zinc finger
CDDcd000211.70E-856100No hitNo description
PfamPF006437.0E-75699IPR000315B-box-type zinc finger
PfamPF062032.0E-16266308IPR010402CCT domain
PROSITE profilePS5101716.083266308IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMMMMKQEES TGGGAFGEAS AITNWGGHRV CHTCGGTSSS AAYSCSACDR NERVVRICDA  60
CELAPAVLYC KADAASLCPS CDAHIHSVNH LARRHHRVSI LHPGAPAEEE GGQNDDDEAA  120
SWLLPNPHDD GKLIINMNEA ALVVDDNKED LDTVEYMSTT EEGYGYGGGG EEGVVPFQLP  180
FERYHNFNVT SLFDDDDFYD DDSSSSPKPS TSTNYNHHAV NYMEVGVVPD DDESTEKGRF  240
VHQEMLTSTT NSSTSPAAIK LRGKEREARV VRYREKKLRR KFEKTIRYAS RKAYAETRPR  300
IKGRFAKRSS KLVNNINIDH HHSLFSAAAP IISSHDDQTS STGGGGGGGS YGQVVPSLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6R3R26e-56Q6R3R2_POPDE; CONSTANS-like protein CO1
STRINGLus100051060.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-48CONSTANS-like 2