PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005131
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 89aa    MW: 10523.7 Da    PI: 7.7224
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005131genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.91.7e-072263458
                 -EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY 34 vkkkversaedpkvveitYegeHnh 58
                 ++k+ver++ dp+++++tY++eHn 
  Lus10005131  2 ARKQVERNKFDPEMFVVTYTEEHNE 26
                 89*********************95 PP
2WRKY49.48.9e-1641821959
                 SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY 19 efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                 ++ ++YYrC+s+ +C+v+k+ver++ dp+++++tY++eHnh+
  Lus10005131 41 QNNKGYYRCSSSkTCMVRKQVERNKFDPEMFVVTYTEEHNHH 82
                 67899*****9989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081111.095129IPR003657WRKY domain
PfamPF031062.5E-4225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-5228IPR003657WRKY domain
PfamPF031062.9E-114082IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-144084IPR003657WRKY domain
SuperFamilySSF1182903.14E-124184IPR003657WRKY domain
SMARTSM007742.1E-74183IPR003657WRKY domain
PROSITE profilePS5081118.1194284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MARKQVERNK FDPEMFVVTY TEEHNEHPPG HHNCLAGTTR QNNKGYYRCS SSKTCMVRKQ  60
VERNKFDPEM FVVTYTEEHN HHHPDHHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005131
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027905988.15e-16WRKY transcription factor 22-like
SwissprotO046092e-15WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A4D6MME56e-15A0A4D6MME5_VIGUN; WRKY transcription factor 22
STRINGLus100051312e-60(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-14WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]