PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005132

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 131aa MW: 15235.2 Da PI: 9.9267

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005132	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	47.9	2.7e-15	49	86	23	59
EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+s+ +C+++k+ver++ dpk++++tY++eHnh+ Lus10005132 49 AYYRCSSSkTCMARKQVERNKFDPKMFVVTYTEEHNHH 86 7***9989*************************7 PP
2	WRKY	36.3	1.1e-11	95	129	20	53
S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEE CS WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYe 53 r+YYrC+s+ +C+++k+v+r++ d k+++itY+ Lus10005132 95 GFRGYYRCSSSkRCMARKQVDRNKFDSKMFVITYT 129 569****9989*******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	7.2E-8	43	87	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.4E-14	48	88	IPR003657	WRKY domain
Pfam	PF03106	6.6E-12	49	86	IPR003657	WRKY domain
PROSITE profile	PS50811	18.062	49	88	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-12	49	88	IPR003657	WRKY domain
SMART	SM00774	4.3E-4	93	129	IPR003657	WRKY domain
Pfam	PF03106	1.1E-8	96	129	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.3E-10	96	129	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-8	96	129	IPR003657	WRKY domain
PROSITE profile	PS50811	13.907	97	130	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MYGEEASREE QIRPENVRRH LHGGAQPPPP WQPQLRSNFV SLYGGGFSAY YRCSSSKTCM 60 ARKQVERNKF DPKMFVVTYT EEHNHHLPGN HMSSGFRGYY RCSSSKRCMA RKQVDRNKFD 120 SKMFVITYTE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005132

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10005132	6e-95	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	1e-17	WRKY family protein

Link Out ? help Back to Top
Phytozome	Lus10005132