PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005144

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 250aa MW: 28825.7 Da PI: 5.041

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005144	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.5	2.5e-40	8	136	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 +G rFhP++e+lv++yLk k+ g ++++ ++i+ev+++k+ePw+L + +v+++e+ wyf s+ d ky ++kr+nr+tk+gyWk tg+++ v ++ Lus10005144 8 VGWRFHPSEEQLVNRYLKLKMLGYDHDV-RHIAEVNVNKFEPWQLLgQassEVDSDESVWYFLSCPDYKYVNSKRSNRTTKKGYWKPTGRERIVRAEs 104 79***********************9.88**********6334556777888******************************999987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 ++e++g+kktLvfykgr g+ktdW+mhey+ Lus10005144 105 TNEEIGTKKTLVFYKGRVLGGVKTDWIMHEYK 136 7888*************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.166	6	155	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-43	7	153	IPR003441	NAC domain
Pfam	PF02365	1.6E-21	8	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSSNASRVGW RFHPSEEQLV NRYLKLKMLG YDHDVRHIAE VNVNKFEPWQ LLGQASSEVD 60 SDESVWYFLS CPDYKYVNSK RSNRTTKKGY WKPTGRERIV RAESTNEEIG TKKTLVFYKG 120 RVLGGVKTDW IMHEYKPLFS FPNQRDFLLY KLMDKSSSST STNDDDEEQP NVERGESSTG 180 MSSNFPNPNP SSYENAPIPI EPKENSQLQA DLDGFSGYDE MSYNLNSVTQ QPWTWNTDEN 240 LSYDHSFYG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-32	9	159	20	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-32	9	159	20	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-32	9	159	20	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-32	9	159	20	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-32	9	159	23	172	NAC domain-containing protein 19
3swm_B	6e-32	9	159	23	172	NAC domain-containing protein 19
3swm_C	6e-32	9	159	23	172	NAC domain-containing protein 19
3swm_D	6e-32	9	159	23	172	NAC domain-containing protein 19
3swp_A	6e-32	9	159	23	172	NAC domain-containing protein 19
3swp_B	6e-32	9	159	23	172	NAC domain-containing protein 19
3swp_C	6e-32	9	159	23	172	NAC domain-containing protein 19
3swp_D	6e-32	9	159	23	172	NAC domain-containing protein 19
4dul_A	6e-32	9	159	20	169	NAC domain-containing protein 19
4dul_B	6e-32	9	159	20	169	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005144

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301328.1	4e-66	protein NTM1-like 9
Refseq	XP_024450979.1	4e-66	protein NTM1-like 9
TrEMBL	B9GPV5	1e-64	B9GPV5_POPTR; Uncharacterized protein
STRING	Lus10005144	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-39	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Lus10005144