PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005149
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 171aa    MW: 18625.7 Da    PI: 10.1
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005149genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-1597140249
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                  +y+GVr+++ +grWvAeIr p+e   ++r +lg f+taeeAa  +++a
  Lus10005149  97 KYRGVRRRP-WGRWVAEIRNPVE---HRRSWLGGFDTAEEAAVVYDEA 140
                  8********.**********876...5******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.63E-2296154No hitNo description
SMARTSM003806.6E-1997166IPR001471AP2/ERF domain
PROSITE profilePS5103218.51897140IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1697140IPR016177DNA-binding domain
PfamPF008479.0E-1097140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2197140IPR001471AP2/ERF domain
PRINTSPR003673.4E-998109IPR001471AP2/ERF domain
PRINTSPR003673.4E-9120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSRLPAADGY FREHRTVTRK VLGGDEFNYM TKIVRVSVTD GDATDSSGEE SDGGRRETVR  60
KYIHEIRLLD RSAEQGTKMK RNSKNQKSTP PSAVGQKYRG VRRRPWGRWV AEIRNPVEHR  120
RSWLGGFDTA EEAAVVYDEA PAGGDGAIRG GDGRGVLQGK CGVISGGGSC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-13971401458Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005149
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320179.22e-33pathogenesis-related genes transcriptional activator PTI6
RefseqXP_024450586.11e-33ethylene-responsive transcription factor CRF2 isoform X2
TrEMBLB9I8U14e-32B9I8U1_POPTR; ERF family protein
STRINGLus100051491e-121(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-18cytokinin response factor 4