PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005243
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 90aa    MW: 10038.5 Da    PI: 9.8449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005243genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-141459148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+e+d llv +++ +G+ +W++I+ t g   + k+c++rw +yl
      Lus10005243 14 KRPWTPEDDILLVSYIHHHGPSNWRSIPPTTG--SCSKSCRLRWTNYL 59
                     579****************************9..59**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-19562IPR009057Homeodomain-like
PROSITE profilePS5129419.693963IPR017930Myb domain
SMARTSM007172.3E-81361IPR001005SANT/Myb domain
PfamPF002491.8E-121459IPR001005SANT/Myb domain
SuperFamilySSF466896.47E-201586IPR009057Homeodomain-like
CDDcd001671.27E-91659No hitNo description
PROSITE profilePS500903.9386089IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-86385IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRAPCCDAG GVKKRPWTPE DDILLVSYIH HHGPSNWRSI PPTTGSCSKS CRLRWTNYLR  60
PGIKRGNFTH QEDQMIIHLQ ALLGNSSIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017621802.13e-45PREDICTED: myb-related protein 306-like isoform X1
RefseqXP_023768174.13e-45myb-related protein 306-like
SwissprotP813926e-44MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2I0LBC11e-44A0A2I0LBC1_PUNGR; Uncharacterized protein
TrEMBLA0A2J6L4626e-44A0A2J6L462_LACSA; Uncharacterized protein
TrEMBLA0A2P5S1V75e-44A0A2P5S1V7_GOSBA; Uncharacterized protein
TrEMBLC6TF185e-44C6TF18_SOYBN; Uncharacterized protein
TrEMBLQ0PJD93e-44Q0PJD9_SOYBN; MYB transcription factor MYB53 (Fragment)
STRINGLus100052432e-61(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.15e-46myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]