PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005244
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 241aa    MW: 27425 Da    PI: 9.3312
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005244genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer45.61.6e-141332960
  ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRreveee 60
                 mps++++ +++++l+CaACgCHRnFHRre+e++
  Lus10005244  1 MPSPNSTpSDPTSLRCAACGCHRNFHRREPEDN 33
                 6777788899*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.812129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-10530IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-51432IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.19E-16109183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-26109184IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-22122179IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MPSPNSTPSD PTSLRCAACG CHRNFHRREP EDNNNNNNNN QAPPPPPPQL IEYQPHHRHH  60
PLPPPMPPRR HHEQRSPNSA SPPPISSSYY PSAPRMLMAL SVENNNNNNN NVTRSDPGAS  120
SRKRHRTKFS QIQKERMYEF AERVGWKMVK SDEELVKEFC NQVKVDKGVL KVWMHNNKNT  180
FGKQQEQRVI SSHNNHHNHN HQLSNNQNNG DDLNHNSSHQ QNQNQCLFGS DNHAGSCSSS  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-181221801775ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084702.11e-66zinc-finger homeodomain protein 9
TrEMBLA0A1U7ZYG68e-60A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9
STRINGLus100052441e-175(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-34homeobox protein 34