PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005245
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 311aa    MW: 33840.5 Da    PI: 9.8843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005245genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv +++ +G+ +W++I+   g++R+ k+c++rw +yl
      Lus10005245 14 KGPWTPEEDILLVSYIHHHGPSNWRSIPTNTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.34.9e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +Ed+ + ++ ++lG++ W++Ia++++  Rt++++k++w+++l
      Lus10005245  67 RGNFTHQEDQMITHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.604965IPR017930Myb domain
SuperFamilySSF466893.07E-3011108IPR009057Homeodomain-like
SMARTSM007172.3E-141363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231567IPR009057Homeodomain-like
CDDcd001671.78E-111661No hitNo description
PROSITE profilePS5129419.80366116IPR017930Myb domain
SMARTSM007173.3E-1566114IPR001005SANT/Myb domain
PfamPF002499.1E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2468116IPR009057Homeodomain-like
CDDcd001672.42E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRAPCCDAG GVKKGPWTPE EDILLVSYIH HHGPSNWRSI PTNTGLRRCS KSCRLRWTNY  60
LRPGIKRGNF THQEDQMITH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLLKNL  120
SNNSPHRINN GVPDNHQRNS SPASRTSSPS SSASSSSASS SRGQWERRLQ TDIHTARQAL  180
SDAISPSLSS APDLNSSHAP PTAAAAYAYS AENIAKLLKG WMKKSKTDDS TAGGESSQVS  240
GYSTVGLAGQ SMDLGSGFTN SDPDDTTTCG DDRKAEEARL SLLEIFGCWR NGSGMRNGRP  300
PPGNTSFCRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005245
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879369.11e-98myb-related protein 306
SwissprotQ9SN782e-95MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A2N9FVI24e-95A0A2N9FVI2_FAGSY; Uncharacterized protein
STRINGLus100052450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.13e-84myb domain protein 30
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]