PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005281
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 252aa    MW: 28730.1 Da    PI: 5.1581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005281genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-21107158255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd  ++ng  +r++lg+f+taeeAa a+++a+++++g
  Lus10005281 107 HYRGVRRRP-WGKYAAEIRDsTRNNG--ARVWLGTFDTAEEAALAYDRAALRIRG 158
                  8********.**********444454..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.26E-29106167No hitNo description
Gene3DG3DSA:3.30.730.103.6E-29106168IPR001471AP2/ERF domain
PROSITE profilePS5103223.393107167IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-20107168IPR016177DNA-binding domain
PfamPF008475.0E-15107158IPR001471AP2/ERF domain
SMARTSM003801.6E-35107173IPR001471AP2/ERF domain
PRINTSPR003672.2E-11108119IPR001471AP2/ERF domain
PRINTSPR003672.2E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQSNMPTLED VWASFINGNQ SQNYEDLPSL KDRNGDELMG GQPMQSILER LPSLGRWISM  60
GEEAWDEILK ASFIRPSMES TEVPSVSDAF SDRKMAVEKN KVVRTKHYRG VRRRPWGKYA  120
AEIRDSTRNN GARVWLGTFD TAEEAALAYD RAALRIRGLK KARLNFPLEA VTNSYNGVDH  180
NGESGGRKRK RESRECEGNE ERAVGKEVKL DRDMARAEDE GLFQEEDFKF DELQRFIESD  240
LLNNLLFSLS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26103168164ATERF1
3gcc_A5e-26103168164ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005281
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024198297.16e-55ethylene-responsive transcription factor ERF091
TrEMBLA0A1R3I1747e-55A0A1R3I174_COCAP; Uncharacterized protein
STRINGLus100052810.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.19e-23ERF family protein