PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005284
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 234aa    MW: 25929.9 Da    PI: 6.7104
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005284genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.27.5e-35181181100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +CaaCk++rr+Ca+dC+l pyfp +++k+f ++h +FG++n++++l++++ +  r++a++slv+eA+a+a+dPv+G +g+++klqq+ ++l+++l+l+
  Lus10005284  18 KCAACKYQRRRCAEDCALYPYFPTDRTKEFTAAHAVFGVKNMTSMLTEINLHVdRKKAVDSLVWEANAWAEDPVNGPLGLYKKLQQEKKELESQLQLA 115
                  5************************************************88877*******************************************9 PP

       DUF260  98 kee 100
                  k++
  Lus10005284 116 KHQ 118
                  997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8117119IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3318116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDGATSSDKS GANSSRHKCA ACKYQRRRCA EDCALYPYFP TDRTKEFTAA HAVFGVKNMT  60
SMLTEINLHV DRKKAVDSLV WEANAWAEDP VNGPLGLYKK LQQEKKELES QLQLAKHQTT  120
RMSSFGDYGG DDVGSCAMMM MNPSGLGFQS SLMAESGGNN SYDFQYYQQR LGHQLIPSYH  180
HYGNGLQIHQ QQVLPMSIPR YNPSLEGQVN MYKDDAIDVS TMEGSTSTGN QGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-221913012121LOB family transfactor Ramosa2.1
5ly0_B5e-221913012121LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100052841e-177(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.19e-25LOB domain-containing protein 4