PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005313

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 220aa MW: 25214.3 Da PI: 7.845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005313	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++C++apyfp +qp+kfa vhk+FGasnv kllk+l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+ql+++l+l++ Lus10005313 7 PCAACKFLRRKCTQECIFAPYFPPDQPQKFASVHKVFGASNVAKLLKELSAVQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQLHHDLELAR 104 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Lus10005313 105 RE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.606	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MMSSNSPCAA CKFLRRKCTQ ECIFAPYFPP DQPQKFASVH KVFGASNVAK LLKELSAVQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLHHDL ELARRELANY IGAPMPHQQQ 120 QYQNYPSYPN HNQQEVRFNG GGLGGNYEIT RNYINYEQIQ SRNNAEAAQV FFQTRQQEGE 180 TGHFDYNRKM LRRRTAAAGD QEEDREVEVD RGLLMRPTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-48	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-48	4	110	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005313

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011039214.1	5e-68	PREDICTED: LOB domain-containing protein 36 isoform X1
Refseq	XP_011039215.1	5e-68	PREDICTED: LOB domain-containing protein 36 isoform X1
Refseq	XP_011039216.1	4e-68	PREDICTED: LOB domain-containing protein 36 isoform X2
Refseq	XP_024460961.1	4e-68	LOB domain-containing protein 36
Swissprot	Q9FKZ3	6e-66	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2I4KL02	1e-66	A0A2I4KL02_POPTR; LBD family protein
TrEMBL	A0A2K1ZNX8	1e-66	A0A2K1ZNX8_POPTR; Uncharacterized protein
STRING	Lus10005313	1e-164	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-67	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Lus10005313

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]