PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005419
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family BES1
Protein Properties Length: 344aa    MW: 36654.4 Da    PI: 8.6599
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005419genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822212.11.4e-6521491149
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaag.ssasaspesslqss 97 
                  +++ r+ptwkErEnnkrRERrRRaiaakiy+GLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg++p e+++++g  s+sasp+ss+q  
  Lus10005419   2 TSGSRMPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEEDGTTYRKGCRPVERMDIMGgGSTSASPCSSYQ-- 97 
                  5789************************************************************************999987526888********.. PP

       DUF822  98 lkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlslvsss 149
                        +sp++sy++sp+sssfpsp +++  +++++      ++l+p+l++ls++sss
  Lus10005419  98 ------PSPCASYNPSPASSSFPSPINSSRYNATNPngntdaNCLIPWLKNLSSSSSS 149
                  ......********************99999998889999999*********986665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-664144IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MTSGSRMPTW KERENNKRRE RRRRAIAAKI YSGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WIVEEDGTTY RKGCRPVERM DIMGGGSTSA SPCSSYQPSP CASYNPSPAS SSFPSPINSS  120
RYNATNPNGN TDANCLIPWL KNLSSSSSSS SSKHNHHPHN LYIHNGSISA PVTPPLSSPT  180
ATSPPRGEHD HPAAGSFPSW GGGQSSYPIF QPSSSMPSST PQSPGRSQPD SGWLAGIQSG  240
PSSPTFSLVS RNPFGWRDEL VSGAGSRMWT PGQSGTCSPA VPAGVDHTAD VPMVDNGMTA  300
EFAFGSSNGN GGGRLVKAWE GERIHDVLIS DDLELTLGNS KTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005419
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352718.11e-143PREDICTED: BES1/BZR1 homolog protein 4-like
SwissprotQ9ZV881e-118BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLB9S8F21e-137B9S8F2_RICCO; BRASSINAZOLE-RESISTANT 2 protein, putative
STRINGLus100054190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26613375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-85BES1/BZR1 homolog 4