PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005420
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 491aa    MW: 55145.4 Da    PI: 7.8401
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005420genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.3e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++ ++++sws++++sf+v+ + ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
   Lus10005420  14 FLAKTYEMVDDPSSDSVVSWSSSNKSFIVWSPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANEDFVRGQPHLMKNIH 101
                   9**************************************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10005420 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDETQGGSGS LPPFLAKTYE MVDDPSSDSV VSWSSSNKSF IVWSPPEFSR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKADPE QWEFANEDFV RGQPHLMKNI HRRKPVHSHS MQTVQVQQQG  120
SNNNPLTDAE RQSLKGDIEK LRRDKQVLVS ELQRKEQERR GFELQMAALR GKFQDLEKRQ  180
QSISSCLTKA LKQPGILALD LMPKFEGHDR KRRLPRLDCI DDDPMKEDTQ MEVSTCLPRG  240
STALLNLEKC EQLESSLTFW ENVVNDVRQS APPFIRRASS MVEMDECTSC ADSPTPSILQ  300
LNIDVHPKSS GIDMNSEPSV PGTGELSPPR EQTTGTAAGV NDVFWEQLLT ENPGSADAQE  360
VQSERRDSDG RKNDNKPSSD HGRNWWNMRS VNSLAGQALF VAACTPLVPS VHILTGQVHK  420
AGPGLVTLAV YSGPDSLNRI NGCNYATKLM VHPFCFLLVS ARRKFRWISP SRFLLLISCH  480
CCLKRSKCGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-22610312120Heat shock factor protein 1
5d5u_B1e-22710322129Heat shock factor protein 1
5d5v_B1e-22710322129Heat shock factor protein 1
5d5v_D1e-22710322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599108.10.0heat stress transcription factor A-4a isoform X1
RefseqXP_021599109.10.0heat stress transcription factor A-4a isoform X1
SwissprotO494031e-115HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2C9U5F30.0A0A2C9U5F3_MANES; Uncharacterized protein
STRINGLus100054200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-117heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]