PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005428
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 243aa    MW: 26690.6 Da    PI: 5.0496
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-2962119359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D + WrKYGqK++kgs++pr+YY+C+s+ gCp++k+vers+ dp+++++tY+++Hnh+
  Lus10005428  62 DSWGWRKYGQKPIKGSPYPRGYYKCSSSkGCPARKQVERSRVDPTTLVVTYSSDHNHP 119
                  99************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3057121IPR003657WRKY domain
SuperFamilySSF1182906.02E-2560121IPR003657WRKY domain
SMARTSM007741.4E-3360120IPR003657WRKY domain
PROSITE profilePS5081131.88162121IPR003657WRKY domain
PfamPF031069.6E-2562119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEDDEHDDNT TGSGPDNTKL ASHKPSKRGL RKKVVSIPIK EVEGVCSSGR LKGSEIASPP  60
LDSWGWRKYG QKPIKGSPYP RGYYKCSSSK GCPARKQVER SRVDPTTLVV TYSSDHNHPS  120
PPPPASLSHH HYNNPKLAAA VDQDTLPGNP EPEPDPDRER FANFEDEFSW FGEMETSSSA  180
VILDTPLLVA VDAEMSSSLD LDVFLPMREE DDESLFAGLG ELPECTSVFR HHRGMGTEVQ  240
IC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-1932121679Disease resistance protein RRS1
5w3x_D3e-1932121679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021660022.13e-81probable WRKY transcription factor 65
SwissprotQ9LP562e-60WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0U1VMX95e-79A0A0U1VMX9_HEVBR; WRKY super family protein
STRINGLus100054281e-179(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-56WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]