PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005451
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 224aa    MW: 24860.2 Da    PI: 4.3994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005451genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-07123166755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ r+RR+ri ++ +eL +l+P  +      K++ a++ + A +Y+k Lq
  Lus10005451 123 IAARKRRRRISEKTQELGKLIPGgN------KMNTADMFQAAAKYVKFLQ 166
                  677*******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-12115176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.595116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-11121185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-10122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5123166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-4130170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MALSFSSHFD SSSFIFPADD DCQFPTTADD FFWPSETEFL FPPQLELAES FPHHDFVFPE  60
EDSVIEFDGG LTIPPTPEFI HLDELNFSAP PPLPVFQPPV GEFNLGTTKK QGNDSSELSV  120
QSIAARKRRR RISEKTQELG KLIPGGNKMN TADMFQAAAK YVKFLQAQLA VLQLTTSLQE  180
PIEMEKIVAS PAVQKKLYSE GKCLVPTELL HALAINELLA EKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125129RKRRR
2126131KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005451
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270265.13e-41PREDICTED: transcription factor bHLH52
TrEMBLF6I3G38e-40F6I3G3_VITVI; Uncharacterized protein
STRINGLus100054511e-161(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-17bHLH family protein