PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005548

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

SBP

Protein Properties

Length: 188aa MW: 21273.5 Da PI: 8.66

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005548	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.9e-41	52	128	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C a+lse k+yhrrhkvC++hsk+p+vlvsgl+qrfCqqCsrfhe+sefDe+krsCrrrLa+hnerrrk++ Lus10005548 52 CCQVERCGANLSEGKQYHRRHKVCDFHSKCPSVLVSGLRQRFCQQCSRFHEVSEFDEAKRSCRRRLAGHNERRRKSS 128 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-31	48	114	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.701	50	127	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-37	51	130	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.8E-31	53	126	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MDFRTTLLPN DHQVDDDEVE DQQLQEFDHE VIGSWKKGAG GLPPPRRASN LCCQVERCGA 60 NLSEGKQYHR RHKVCDFHSK CPSVLVSGLR QRFCQQCSRF HEVSEFDEAK RSCRRRLAGH 120 NERRRKSSST TAAESSNYGG GISAQMQQHQ CTNNSRQSDI NNTDGGIRFQ QVAAAGNLNY 180 KRSQIRY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-35	53	126	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005548

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850782.1	2e-48	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q38741	1e-39	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A4D6J0J8	3e-48	A0A4D6J0J8_MANIN; SPL5
STRING	Lus10005548	1e-138	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	7e-41	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Phytozome	Lus10005548

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]