PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10005584

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

STAT

Protein Properties

Length: 703aa MW: 79361.8 Da PI: 5.2257

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10005584	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	185.9	5e-58	231	350	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 ldvvllna+ q+++k++ev++sL+yad+gl+vek++d+eapLL+s+dG+ef+s dr +kll+Gr+sfklkisqLsskc+nrLf ikfe++k k y+fl Lus10005584 231 LDVVLLNAINQSINKELEVISSLIYADNGLPVEKTSDDEAPLLTSFDGIEFPSCDRTSKLLNGRTSFKLKISQLSSKCENRLFYIKFELLKYKGYRFL 328 8*********************************************************************************************** PP STAT 99 eavskpirCisrsrntrssslt 120 ea+ +pirCisr+r r++s+t Lus10005584 329 EAFCHPIRCISRNRYPRPLSAT 350 ***************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	5.98E-6	34	193	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:3.30.505.10	1.1E-5	600	666	IPR000980	SH2 domain
SuperFamily	SSF55550	4.21E-9	601	694	IPR000980	SH2 domain
PROSITE profile	PS50001	9.351	607	688	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MGDDTIKTED YTSLKEFRVD IDVAKGEEEN DAERKFSVCF WIYLVKSSSV SYPTPIINQV 60 GSDGDFVAPF LFLNERRIMM LRLLCPVRKD SPPHTDSASL LETPHASMAT EFPLEKWVHV 120 GCEVSATVLH LHINGENLVE LCFPLPSMTQ SNSDGLKTIT LVGPSIDNCL QGYVHDVQVS 180 HTSSSVRDCY FKDPPLQLCI DKSSTIEIEE DNDGIWSIVG GKASCRRIFS LDVVLLNAIN 240 QSINKELEVI SSLIYADNGL PVEKTSDDEA PLLTSFDGIE FPSCDRTSKL LNGRTSFKLK 300 ISQLSSKCEN RLFYIKFELL KYKGYRFLEA FCHPIRCISR NRYPRPLSAT LRRPTSTQYS 360 LSVCPSIASD NGSLELQNSL HEGDVTPSSK KFKLVDEQTS SAPQTEEEHH SQGFAANQAE 420 AMELVEEGNS PSELDSTEER ISDYNIESKT QYSIPDPMIF KYCLGSLTDR ALLMKEVSTS 480 ASDEELFRFA DKVSLYSGCA HHRNSIVIGK KLIEEGTRLW NSITQQNHPA RWENIAFEIE 540 KQFMKIASCS TRSLVEQDYD LLRRIAGCRE YMAQENFEKM WCWLYPVACT LSRGWVNSLW 600 KCSSPKWIEG FITKEEAELS LRGARGLQEP GTFILRFPTS RCWPHPDSGG LVVTYVGSDY 660 SIHHRLLSSE YINSNERQRS AKQVQEMILA EPELCRLGRQ AS*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MGDDTIKTED YTSLKEFRVD IDVAKGEEEN DAERKFSVCF WIYLVKSSSV SYPTPIINQV  60
GSDGDFVAPF LFLNERRIMM LRLLCPVRKD SPPHTDSASL LETPHASMAT EFPLEKWVHV  120
GCEVSATVLH LHINGENLVE LCFPLPSMTQ SNSDGLKTIT LVGPSIDNCL QGYVHDVQVS  180
HTSSSVRDCY FKDPPLQLCI DKSSTIEIEE DNDGIWSIVG GKASCRRIFS LDVVLLNAIN  240
QSINKELEVI SSLIYADNGL PVEKTSDDEA PLLTSFDGIE FPSCDRTSKL LNGRTSFKLK  300
ISQLSSKCEN RLFYIKFELL KYKGYRFLEA FCHPIRCISR NRYPRPLSAT LRRPTSTQYS  360
LSVCPSIASD NGSLELQNSL HEGDVTPSSK KFKLVDEQTS SAPQTEEEHH SQGFAANQAE  420
AMELVEEGNS PSELDSTEER ISDYNIESKT QYSIPDPMIF KYCLGSLTDR ALLMKEVSTS  480
ASDEELFRFA DKVSLYSGCA HHRNSIVIGK KLIEEGTRLW NSITQQNHPA RWENIAFEIE  540
KQFMKIASCS TRSLVEQDYD LLRRIAGCRE YMAQENFEKM WCWLYPVACT LSRGWVNSLW  600
KCSSPKWIEG FITKEEAELS LRGARGLQEP GTFILRFPTS RCWPHPDSGG LVVTYVGSDY  660
SIHHRLLSSE YINSNERQRS AKQVQEMILA EPELCRLGRQ AS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10005584

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021661875.1	0.0	uncharacterized protein LOC110651007
TrEMBL	A0A251L8A0	0.0	A0A251L8A0_MANES; Uncharacterized protein
STRING	Lus10005584	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6710	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.1	0.0	SH2 domain protein A

Link Out ? help Back to Top
Phytozome	Lus10005584