PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005757
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 211aa    MW: 24410.9 Da    PI: 8.4508
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005757genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.85e-151566156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++  +++++q+ eLe++F++++ p++e+r     klgL+++qVk+WFqN+R++ k
  Lus10005757 15 KKNYKRHSPSQILELEKAFKECSRPDKEQRL----KLGLDTSQVKFWFQNHRTQLK 66
                 6788899***********************7....679**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-14971IPR009057Homeodomain-like
SuperFamilySSF466891.84E-14968IPR009057Homeodomain-like
PROSITE profilePS5007112.1631268IPR001356Homeobox domain
SMARTSM003892.3E-111472IPR001356Homeobox domain
CDDcd000864.39E-131569No hitNo description
PfamPF000461.5E-121566IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEGQSFAEEQ QHPRKKNYKR HSPSQILELE KAFKECSRPD KEQRLKLGLD TSQVKFWFQN  60
HRTQLKTQME RYETVLMSEA IEKIKVENVM LSQYLQNPLC HNCCGPEVFE LFSFGKQQLR  120
IENARLKEEI VRVCSLVKKY LGRPLLSFVL ASPYAPSNYG KYGPTTSNVD IGIDFSHPSI  180
KDVNRKMVVP PTSGEEVSSF DKSMYVDFYE *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005757
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9M2E81e-42HDG1_ARATH; Homeobox-leucine zipper protein HDG1
STRINGLus100057571e-156(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.23e-45HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]