PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005759
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 753aa    MW: 83454.2 Da    PI: 5.7724
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005759genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2053108156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++k +++t+ q++eLe+ F+++++p++++r eL++klgL++rq+k+WFqNrR++ k
  Lus10005759  53 KKKYHRHTQFQITELEKSFKECPHPDEKQRLELSRKLGLETRQIKFWFQNRRTQLK 108
                  79999***********************************************9987 PP
2START161.56.4e-512504772206
                  HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  +a++a++el+ +++ +ep+W+k +       e++n de+ ++ +++ +     + +ea+r++g v  ++  lve l+d++ +W  t+     + +++e
  Lus10005759 250 FALAAMNELFNMVQTDEPLWMKCPelgtgnrEMLNLDEYARIAVPTLGlkrsgFITEASRETGTVMINSYALVEMLMDVN-RWVGTFSslvaRSSIIE 346
                  5789***************************************99888999999**************************.99999999999****** PP

                  EECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
        START  84 vissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                  v+s g       g+lqlm a+lq++splvp R   f+R+++q ++g+w++vdvS+    + ++s s+  + +lpSg++i++++ng+skvtw+eh +++
  Lus10005759 347 VLSYGpvngskdGTLQLMEADLQVISPLVPvRQTKFLRFCKQRSEGVWAVVDVSIGASHEGSSSYSLPTSMRLPSGCVIQDMANGYSKVTWMEHSEYD 444
                  ************************************************************999889999999************************** PP

                  SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                  + ++h +lr++++sg  +ga +w++tlqr+ce+
  Lus10005759 445 ETSIHRMLRPVISSGKGFGAERWMSTLQRYCEC 477
                  *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2038110IPR009057Homeodomain-like
SuperFamilySSF466891.55E-2040110IPR009057Homeodomain-like
PROSITE profilePS5007117.94550110IPR001356Homeobox domain
SMARTSM003891.5E-1852114IPR001356Homeobox domain
PfamPF000461.3E-1753108IPR001356Homeobox domain
CDDcd000869.17E-2053110No hitNo description
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PROSITE profilePS5084838.08240480IPR002913START domain
SuperFamilySSF559617.55E-25242478No hitNo description
CDDcd088755.44E-95244476No hitNo description
SMARTSM002341.3E-33249477IPR002913START domain
PfamPF018521.1E-43250477IPR002913START domain
SuperFamilySSF559611.92E-15524746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MEGHGDQSFD ANSLLGRLNW EDESGSDNNL FDGNGSGDDQ PDVDQQQHQR HKKKKYHRHT  60
QFQITELEKS FKECPHPDEK QRLELSRKLG LETRQIKFWF QNRRTQLKTQ LERHDNVMMR  120
QENDKLKAEN EMLRQGLGDP LCHNCGGPVV PRHVSFEQQQ LRIENARLKD ELGRVYSLVS  180
KYLGVPISPS FVVPPSLYAS NGYGPMPTNV DSLPMGIDFS DPCIAGVLPM MRQPSSDEVS  240
SLDKPMFADF ALAAMNELFN MVQTDEPLWM KCPELGTGNR EMLNLDEYAR IAVPTLGLKR  300
SGFITEASRE TGTVMINSYA LVEMLMDVNR WVGTFSSLVA RSSIIEVLSY GPVNGSKDGT  360
LQLMEADLQV ISPLVPVRQT KFLRFCKQRS EGVWAVVDVS IGASHEGSSS YSLPTSMRLP  420
SGCVIQDMAN GYSKVTWMEH SEYDETSIHR MLRPVISSGK GFGAERWMST LQRYCECLNI  480
IMSSSTMPED PSLMTIAGKK SVLRLSHRMV DNFCSGVVSG GRIGGHKWET MTAKDVSQDV  540
KILARKSLSE PGEPSGVVLA ASTSVWLPVS RQRLFDFLSN NRTRKEWDLL TNCGLMHEVI  600
RIPKASTVGN CISLLRSVDV DPSTVSEATK ETVILQEMWH DPSGSLLVYT PVDVPSMEMV  660
MNGGGNTFAS LLPCGFAILP DGRDQQNLSM STAETSGVGD MVEAGGCILT IGFQIIVNTL  720
PGGKLGMESV DTVNNLLSCT LQRIKDPLQV MT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005759
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510822.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_015581247.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
RefseqXP_015581251.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
RefseqXP_025014537.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLB9R9E70.0B9R9E7_RICCO; Homeobox protein, putative
STRINGLus100057590.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]