PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005805
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 355aa    MW: 38258.7 Da    PI: 10.1313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005805genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20173222255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp    ++ +r++lg+f tae Aa+a+++a+++++g
  Lus10005805 173 KYRGVRRRP-WGKWAAEIRDP----IKaARVWLGTFETAEAAARAYDEAALRFRG 222
                  8********.**********7....357************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.8E-33172231IPR001471AP2/ERF domain
PROSITE profilePS5103226.015173230IPR001471AP2/ERF domain
CDDcd000182.23E-22173232No hitNo description
SuperFamilySSF541711.18E-22173231IPR016177DNA-binding domain
SMARTSM003803.6E-38173236IPR001471AP2/ERF domain
PfamPF008471.0E-13173222IPR001471AP2/ERF domain
PRINTSPR003671.5E-11174185IPR001471AP2/ERF domain
PRINTSPR003671.5E-11196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDNRNNSKGK QVIRSENPPL EMVEVGGEMV EEVVKATPRH KLLSSEMEMS AMVSALTHVV  60
ASGGGGASGS QFPPFPTRES SDYEVGGRTK SNNLWIGNDG FGAPPQQLPL HLPPLASGVH  120
LYRPASYLFP PPAQGGSIIN NASQPSIQQR PQPTYQTVNN RTEDATAGTV GRKYRGVRRR  180
PWGKWAAEIR DPIKAARVWL GTFETAEAAA RAYDEAALRF RGSKAKLNFP ENVRMVIPNT  240
ATSTITNNIN VPFFSQQNRF VNTMGMNRDR RPVGGSSSSQ LVLGVGGYYD QHQNQNVASP  300
NLPQGYQFRP FVAPTPPSAS PCYQPLQSTG SGEFSTAPWQ GSPSGGSRET SASG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23171233366ATERF1
3gcc_A2e-23171233366ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005805
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022132518.14e-40ethylene-responsive transcription factor ABR1-like
STRINGLus100058050.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-25related to AP2 6