PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005925
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 86aa    MW: 9759.2 Da    PI: 7.2529
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005925genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.33.1e-251272161
                  HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
  HSF_DNA-bind  1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61
                  +Fl k+ye++ed++ ++++sws+  n+fvv++  ef+k++Lpk+Fkh+nf+SFvRQLn+Y 
   Lus10005925 12 SFLCKTYELVEDPSPDSVVSWSSGDNNFVVWNVPEFQKQLLPKFFKHNNFSSFVRQLNTYV 72
                  59**********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.2E-19983IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-26975IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-231175IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.7E-161336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-211375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-165163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-166476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MVDVAVGSIV PSFLCKTYEL VEDPSPDSVV SWSSGDNNFV VWNVPEFQKQ LLPKFFKHNN  60
FSSFVRQLNT YVCRRSSLLI PLGFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-198752491Heat shock factor protein 1
5d5v_B9e-198752491Heat shock factor protein 1
5d5v_D9e-198752491Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005925
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118959.16e-29PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_020889453.16e-29heat stress transcription factor A-1e
RefseqXP_022742783.16e-29heat stress transcription factor A-1e-like
SwissprotQ9SCW51e-29HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A1R3JP286e-29A0A1R3JP28_9ROSI; Heat shock factor (HSF)-type, DNA-binding protein
STRINGLus100059255e-56(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.16e-24heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]