PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005959
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 250aa    MW: 27435.2 Da    PI: 8.6615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005959genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-051451831154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  rR +++ +++  L++l+ +      +K + a++L++A  YIk L
  Lus10005959 145 RRKQKLSDKITALQKLVSPY-----GKTDTASVLQQASLYIKLL 183
                  8999**************99.....9****************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.969134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-10144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-6145188No hitNo description
Gene3DG3DSA:4.10.280.102.1E-8145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MFPGGSSNEA LVMPSLDTSM PMDNARILNL DSFCWDSSNL ITSYDSPFEG PTGYGLYSSC  60
DTFSNQLKNV SCPAPTPVAD NYVRAVLRLI DQSCSHSGQV RKRRIEVSSI ECKGGKRKKS  120
NTITTSEKTQ QFVDIQEFKI EVPARRKQKL SDKITALQKL VSPYGKTDTA SVLQQASLYI  180
KLLHKQLQML SQSASAADDL ETDAWTTTNS VTNRDGQVVV GLRSRGLCLL PLCLANKVNS  240
LKSINDLSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101118KRRIEVSSIECKGGKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100059590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-18bHLH family protein