PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006127
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 272aa    MW: 28942.6 Da    PI: 6.2935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006127genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-184089255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  +Aa a++aa++kl+g
  Lus10006127 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHDAALAYDAAARKLYG 89
                 69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.55E-203998No hitNo description
Gene3DG3DSA:3.30.730.103.2E-304098IPR001471AP2/ERF domain
PfamPF008472.6E-134089IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-214098IPR016177DNA-binding domain
SMARTSM003806.9E-3540103IPR001471AP2/ERF domain
PROSITE profilePS5103222.3924097IPR001471AP2/ERF domain
PRINTSPR003671.8E-94152IPR001471AP2/ERF domain
PRINTSPR003671.8E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MPTATSSSTS DHCPKPRASS GSSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSHDAALAY DAAARKLYGP DAKLNLPHFH NSPNNTNNNI NIVPHVDVHV  120
PLSVGCSSLT SSGGPTLSPS FTSTSSSSNN GPTFTSNNDD VAPSADVGYR GFDLALHGSG  180
GGQWVDHYSS SDWNNTDSSS AAAADASCNY NYKVRGNEVW SNLNANLPLM DDSIWVEAAM  240
SLDYFQVAAM QDSNGWDTGS LPPSNTTPWC M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-184197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9R8194e-55B9R819_RICCO; Dehydration-responsive element-binding protein 2G, putative
STRINGLus100061270.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-39ERF family protein