PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006179
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 136aa    MW: 14574.5 Da    PI: 10.6873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006179genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.6e-16857154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                 ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ ++e Aa a++ a  +l+
  Lus10006179  8 KKYKGVRRRK-WGKWVSEIRVP---G-SqERLWLGSYSSPEAAAVAHDIAYYCLR 57
                 59*****998.**********8...4.35***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.39E-20862No hitNo description
SMARTSM003808.8E-21980IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-23974IPR001471AP2/ERF domain
PfamPF008472.1E-8957IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-16960IPR016177DNA-binding domain
PROSITE profilePS5103220.165974IPR001471AP2/ERF domain
PRINTSPR003674.6E-81021IPR001471AP2/ERF domain
PRINTSPR003674.6E-83248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSSSTGDKKY KGVRRRKWGK WVSEIRVPGS QERLWLGSYS SPEAAAVAHD IAYYCLRRGD  60
TSSLSSAGRC CNFPLASLPT SVLRPDLSPK SVQRAASDAG MAGGGGGGAR DEGWICRPSP  120
ARGRLQMPEG RWTRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022939510.11e-41ethylene-responsive transcription factor ERF020
RefseqXP_023551488.11e-41ethylene-responsive transcription factor ERF020
SwissprotQ9C9I87e-36ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2C9WFS42e-39A0A2C9WFS4_MANES; Uncharacterized protein
STRINGLus100061792e-92(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-32ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]