PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006334
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 240aa    MW: 26103.8 Da    PI: 6.5124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006334genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.9e-1653103155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +    +Wv+e+r+p     + +r++lg++ tae+Aa+a++ a+++++g
  Lus10006334  53 PVYRGVRKRN-GDKWVCELREPQ----SkTRVWLGTYPTAEMAARAHDVAALSFRG 103
                  68*****887.8*********83....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1153103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3054113IPR001471AP2/ERF domain
SMARTSM003802.4E-2654117IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-2054113IPR016177DNA-binding domain
PROSITE profilePS5103222.02354111IPR001471AP2/ERF domain
PRINTSPR003675.0E-85566IPR001471AP2/ERF domain
CDDcd000183.53E-2655113No hitNo description
PRINTSPR003675.0E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDMNFNTHHS VTDTSSSDSG SSGGHKLAAG HKLAAENPKK KAGRRVFKET RHPVYRGVRK  60
RNGDKWVCEL REPQSKTRVW LGTYPTAEMA ARAHDVAALS FRGKSACLNF ADSAWRLPLP  120
TSNDNKDVRM AASRAAEMFR PVDCGSTASG SSFNSPPADL SSSVAPSPAE DCWWSEVSSN  180
VGNGGYYVDE ELNMPRLLSE MAEGLLLSPP PSYRAVEESG NDDDQWGSYN GGNDWSLWN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00001PBMTransfer from 471409Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006334
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029177.12e-72PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9LN866e-61DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLV9PCD45e-71V9PCD4_POPEU; C-repeat binding factor 2
STRINGLus100063341e-177(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.14e-63ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]