PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006483
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 242aa    MW: 27152.1 Da    PI: 9.8322
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006483genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-111562281898
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  lp  f++ + ++k ++  +tl de+g ++   +    ++ +  l++GWk+F+ a++L +gD ++F+l+ +++f  +v + r
  Lus10006483 156 LPVWFCKPN-LPK-RDEVMTLIDEEGDEYPTIY--LPRKTG--LSGGWKGFAVAHNLADGDALIFQLITSTSF--KVYITR 228
                  788888776.343.5568***************..555544..************************988888..666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-17122231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-18124230IPR015300DNA-binding pseudobarrel domain
CDDcd100178.01E-22129228No hitNo description
SMARTSM010193.5E-12131230IPR003340B3 DNA binding domain
PfamPF023624.4E-9155228IPR003340B3 DNA binding domain
PROSITE profilePS5086310.475156230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVAKAKQSNY EELRLNRLEE NKKRMEALNL PMLSQSLRTT SPTPSPMKQS KPRPRVVEKQ  60
IVVVRRSSRV ANKPSPVYAE VIVERVVIPR RVSSKTRDLS NRVYASDEAR AEALEKAENL  120
QSSLESHYPS FVKSMLISHV SGGFWLAFCV DDPQGLPVWF CKPNLPKRDE VMTLIDEEGD  180
EYPTIYLPRK TGLSGGWKGF AVAHNLADGD ALIFQLITST SFKVYITRAK GSQEVSDNNN  240
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701849.11e-116PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
SwissprotQ9FMZ44e-80Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A1U8KMB41e-115A0A1U8KMB4_GOSHI; B3 domain-containing protein At5g42700-like isoform X1
STRINGLus100064831e-179(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-69B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]