PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10006489

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 403aa MW: 43150.7 Da PI: 7.2364

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10006489	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.2	2.3e-15	331	382	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r++r+ kNRe+A rsR+RK+a++ eLe +v++L++eN++Lk + ee++++ Lus10006489 331 RRQKRMLKNRESAARSRARKQAYTTELEAEVAKLKEENQQLKRKQEEMTEMQ 382 79****************************************9999999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.2E-13	327	391	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.645	329	380	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.7E-14	331	380	No hit	No description
CDD	cd14707	2.46E-29	331	385	No hit	No description
Pfam	PF00170	2.1E-13	331	383	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	331	381	No hit	No description
PROSITE pattern	PS00036	0	334	349	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MGTNWNFNNI TNDSAQPPGN NMALTRQLSS IYSLTFDEFQ SSVGGIGKDF GSMNMDELLK 60 NIWSAEENQN QNHVNMGAAE DGGILLQRQG SLTLPRTLSQ KTVDEVWKDV WKDYGSGSSG 120 VGVGDSGSGR NPQRQQTLGE ITLEEFLVRA GVVREDITTP VVAAGKVQQS NGVVGVSPFG 180 NNTTTVGYGI GFQQSNGASH GVGLSSGSNN PNYGSNSSLN VNGIIRSNQV QPQLQVHQHQ 240 HQHQHQPPQI FPKLQGNVGY GGMMGIGDPG LDNQGMAGLG GGSSPASQVS SDGIGKSNGE 300 TSSVSPSVPY PYSGGVRGRR ANTAVEKVVE RRQKRMLKNR ESAARSRARK QAYTTELEAE 360 VAKLKEENQQ LKRKQEEMTE MQKNQVSLCG METTAPSFPE PL*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MGTNWNFNNI TNDSAQPPGN NMALTRQLSS IYSLTFDEFQ SSVGGIGKDF GSMNMDELLK  60
NIWSAEENQN QNHVNMGAAE DGGILLQRQG SLTLPRTLSQ KTVDEVWKDV WKDYGSGSSG  120
VGVGDSGSGR NPQRQQTLGE ITLEEFLVRA GVVREDITTP VVAAGKVQQS NGVVGVSPFG  180
NNTTTVGYGI GFQQSNGASH GVGLSSGSNN PNYGSNSSLN VNGIIRSNQV QPQLQVHQHQ  240
HQHQHQPPQI FPKLQGNVGY GGMMGIGDPG LDNQGMAGLG GGSSPASQVS SDGIGKSNGE  300
TSSVSPSVPY PYSGGVRGRR ANTAVEKVVE RRQKRMLKNR ESAARSRARK QAYTTELEAE  360
VAKLKEENQQ LKRKQEEMTE MQKNQVSLCG METTAPSFPE PL*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10006489

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601955.1	1e-121	bZIP transcription factor 23-like isoform X1
Swissprot	Q9M7Q4	2e-96	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A251IQF6	1e-120	A0A251IQF6_MANES; Uncharacterized protein
STRING	Lus10006489	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	6e-44	ABRE binding factor 4

Link Out ? help Back to Top
Phytozome	Lus10006489

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]