PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006491
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 375aa    MW: 40958.4 Da    PI: 6.4057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006491genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10230278355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Lus10006491 230 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 278
                  58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-11225282No hitNo description
PROSITE profilePS5088815.485227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16228294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7230278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGGNGGDLSY QHDMESQIRA APSAMAANPF FASAWDPVVS LGQHESSVGS STMCQNEFSH  60
HQSFPMALDN QPGSDNSHLV HYPFDSGLVE LVGNGNFSEM VGPFGLNECG QIPNPGLHPN  120
FGSQTDQEDH PMSEGGVGAS PDINKRKRVA GSTSPFDSNK KNAKGELDED QSRENCDALK  180
EGDDKKPRPG RIAGSNSQAA KQAKEESNNS GESAKDNYIH IRARRGQATN SHSLAERVRR  240
EKISERMRLL QELVPGCNKI TGKAVMLDEI INYVQSLQQQ VEFLSMKLAT VNPDVNIDIE  300
RILSKDVSQS SPTHDVHTIL FLGLRIAILS SYFMQQLLHP HSNNSLNLGF NPLMNTPHFP  360
TTRNSSHSPK FSNN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006491
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533688.11e-119transcription factor bHLH74 isoform X3
SwissprotQ6NKN94e-65BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A2C9U0J21e-117A0A2C9U0J2_MANES; Uncharacterized protein
STRINGLus100064910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]