PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006541
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 80aa    MW: 9427.95 Da    PI: 9.3726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006541genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-18550348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd ll ++++q+G g W++++   g++R++k+c++rw++yl
      Lus10006541  5 AWTEEEDHLLRKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                     7********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.591154IPR017930Myb domain
SMARTSM007175.7E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-20552IPR009057Homeodomain-like
PfamPF002491.4E-16550IPR001005SANT/Myb domain
CDDcd001678.86E-10550No hitNo description
SuperFamilySSF466891.39E-21678IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-75377IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLRKCIEQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIRRGSFE  60
DEEVELIIKL HKLLGNRQV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006541
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019465221.13e-47PREDICTED: transcription factor MYB114-like isoform X1
RefseqXP_021282776.16e-49transcription factor MYB114-like
SwissprotQ9FNV96e-34MY113_ARATH; Transcription factor MYB113
TrEMBLA0A142D8G13e-46A0A142D8G1_9CARY; Myb transcription factor 5 (Fragment)
TrEMBLA0A2K3NSC74e-46A0A2K3NSC7_TRIPR; Transcription factor MYB 113-like protein
STRINGLus100065415e-51(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-36myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]